Group II intron

Group II catalytic intron, D5
full secondary structure of group II intron
Identifiers
SymbolIntron_gpII
RfamRF00029
Other data
PDB structuresPDBe 6cih
Extra informationEntry contains Splicing domain V (D5) and some consensus 3' to it.
Group II catalytic intron, D1-D4
Identifiers
Symbolgroup-II-D1D4
RfamCL00102
Other data
PDB structuresPDBe 4fb0
Extra informationEntry contains D1-D4, parts 5' to D5.

Group II introns are a large class of self-catalytic ribozymes and mobile genetic elements found within the genes of all three domains of life. Ribozyme activity (e.g., self-splicing) can occur under high-salt conditions in vitro. However, assistance from proteins is required for in vivo splicing. In contrast to group I introns, intron excision occurs in the absence of GTP and involves the formation of a lariat, with an A-residue branchpoint strongly resembling that found in lariats formed during splicing of nuclear pre-mRNA. It is hypothesized that pre-mRNA splicing (see spliceosome) may have evolved from group II introns, due to the similar catalytic mechanism as well as the structural similarity of the Group II Domain V substructure to the U6/U2 extended snRNA. Finally, their ability to site-specifically insert into DNA sites has been exploited as a tool for biotechnology. For example, group II introns can be modified to make site-specific genome insertions and deliver cargo DNA such as reporter genes or lox sites