1998–99 Czech 2. Liga
| Season | 1998–1999 |
|---|---|
| Champions | Bohemians Prague |
| Promoted | Bohemians Prague České Budějovice |
| Relegated | Přerov Česká Lípa |
| Matches played | 240 |
| Goals scored | 574 (2.39 per match) |
| Top goalscorer | Patrik Holomek (18) |
| Average attendance | 1,471 |
← 1997–98 | |
The 1998–99 Czech 2. Liga was the sixth season of the 2. česká fotbalová liga, the second tier of the Czech football league.